Index

A

ACC() (clustering_metrics.metrics.ConfusionMatrix2 method) accuracy() (clustering_metrics.metrics.ConfusionMatrix2 method) adjust_to_null() (clustering_metrics.metrics.ContingencyTable method) adjusted_fowlkes_mallows() (clustering_metrics.metrics.ClusteringMetrics method) adjusted_mutual_info() (clustering_metrics.metrics.ContingencyTable method) adjusted_mutual_info_score() (in module clustering_metrics.metrics) adjusted_rand_index() (clustering_metrics.metrics.ClusteringMetrics method) adjusted_rand_score() (in module clustering_metrics.metrics) assert_all_finite() (in module clustering_metrics.skutils) assignment_cost() (in module clustering_metrics.entropy) assignment_score() (clustering_metrics.metrics.ContingencyTable method)

assignment_score_m1() (clustering_metrics.metrics.ContingencyTable method) assignment_score_m2c() (clustering_metrics.metrics.ContingencyTable method) assignment_score_m2r() (clustering_metrics.metrics.ContingencyTable method) assignment_score_m3() (clustering_metrics.metrics.ContingencyTable method) auc() (in module clustering_metrics.skutils) auc_score() (clustering_metrics.ranking.RocCurve method) auc_xscaled() (in module clustering_metrics.monte_carlo.predictions) aul_score() (clustering_metrics.ranking.LiftCurve method) aul_score_from_clusters() (in module clustering_metrics.ranking) aul_score_from_labels() (in module clustering_metrics.ranking)

B

bc_metrics() (clustering_metrics.metrics.ContingencyTable method) best_clustering_by_score() (clustering_metrics.monte_carlo.predictions.Grid method)

bias_index() (clustering_metrics.metrics.ConfusionMatrix2 method) bincount() (in module clustering_metrics.fixes)

C

centropy() (in module clustering_metrics.entropy) check_consistent_length() (in module clustering_metrics.skutils) chisq_score() (clustering_metrics.metrics.ContingencyTable method) clustering_metrics (module) clustering_metrics.entropy (module) clustering_metrics.ext (module) clustering_metrics.fent (module) clustering_metrics.fent.setup (module) clustering_metrics.fixes (module) clustering_metrics.hungarian (module) clustering_metrics.metrics (module) clustering_metrics.monte_carlo (module) clustering_metrics.monte_carlo.predictions (module) clustering_metrics.monte_carlo.utils (module) clustering_metrics.ranking (module) clustering_metrics.skutils (module) clustering_metrics.utils (module)

ClusteringMetrics (class in clustering_metrics.metrics) cnum_pairs() (in module clustering_metrics.entropy) cohen_kappa() (in module clustering_metrics.metrics) col_diag() (clustering_metrics.metrics.ContingencyTable method) cole_coeff() (clustering_metrics.metrics.ConfusionMatrix2 method) column_or_1d() (in module clustering_metrics.skutils) combine() (clustering_metrics.ext.PHashCombiner method) compare() (clustering_metrics.monte_carlo.predictions.Grid method) compute() (clustering_metrics.monte_carlo.predictions.Grid method) configuration() (in module clustering_metrics.fent.setup) confmat2_type (in module clustering_metrics.metrics) ConfusionMatrix2 (class in clustering_metrics.metrics) ContingencyTable (class in clustering_metrics.metrics) corrplot() (clustering_metrics.monte_carlo.predictions.Grid method) covar() (clustering_metrics.metrics.ConfusionMatrix2 method) create_plots() (in module clustering_metrics.monte_carlo.predictions) csum_pairs() (in module clustering_metrics.entropy)

D

DataConversionWarning describe_matrices() (clustering_metrics.monte_carlo.predictions.Grid method) dice_coeff() (clustering_metrics.metrics.ConfusionMatrix2 method) diseq_coeff() (clustering_metrics.metrics.ConfusionMatrix2 method)

dist_auc() (in module clustering_metrics.ranking) do_mapper() (in module clustering_metrics.monte_carlo.predictions) do_reducer() (in module clustering_metrics.monte_carlo.predictions) DOR() (clustering_metrics.metrics.ConfusionMatrix2 method)

E

emi_from_margins() (in module clustering_metrics.entropy) entropy_scores() (clustering_metrics.metrics.ContingencyTable method)

expected() (clustering_metrics.metrics.ContingencyTable method) expected_freqs_() (clustering_metrics.metrics.ContingencyTable method)

F

FDR() (clustering_metrics.metrics.ConfusionMatrix2 method) fentropy() (in module clustering_metrics.entropy) fill_clusters() (clustering_metrics.monte_carlo.predictions.Grid method) fill_matrices() (clustering_metrics.monte_carlo.predictions.Grid method) fill_sim_clusters() (clustering_metrics.monte_carlo.predictions.Grid method) fill_with_last() (in module clustering_metrics.utils) find_highest() (clustering_metrics.monte_carlo.predictions.Grid method) find_matching_matrix() (clustering_metrics.monte_carlo.predictions.Grid method) FN (clustering_metrics.metrics.ConfusionMatrix2 attribute) FNR() (clustering_metrics.metrics.ConfusionMatrix2 method) fnum_pairs() (in module clustering_metrics.entropy) FOR() (clustering_metrics.metrics.ConfusionMatrix2 method) fowlkes_mallows() (clustering_metrics.metrics.ClusteringMetrics method)

FP (clustering_metrics.metrics.ConfusionMatrix2 attribute) FPR() (clustering_metrics.metrics.ConfusionMatrix2 method) frequency_bias() (clustering_metrics.metrics.ConfusionMatrix2 method) from_ccw() (clustering_metrics.metrics.ConfusionMatrix2 class method) from_clusters() (clustering_metrics.ranking.LiftCurve class method) (clustering_metrics.ranking.RocCurve class method) from_counts() (clustering_metrics.ranking.LiftCurve class method) from_labels() (clustering_metrics.ranking.LiftCurve class method) (clustering_metrics.ranking.RocCurve class method) from_random_counts() (clustering_metrics.metrics.ConfusionMatrix2 class method) from_scores() (clustering_metrics.ranking.RocCurve class method) from_sets() (clustering_metrics.metrics.ConfusionMatrix2 class method) fscore() (clustering_metrics.metrics.ConfusionMatrix2 method) fsum_pairs() (in module clustering_metrics.entropy)

G

g_score() (clustering_metrics.metrics.ContingencyTable method) gapply() (in module clustering_metrics.utils) geometric_mean() (in module clustering_metrics.metrics) geometric_mean_weighted() (in module clustering_metrics.metrics) get_conf() (in module clustering_metrics.monte_carlo.predictions)

get_df_subset() (in module clustering_metrics.utils) get_score() (clustering_metrics.metrics.ClusteringMetrics method) (clustering_metrics.metrics.ConfusionMatrix2 method) getpropval() (in module clustering_metrics.utils) Grid (class in clustering_metrics.monte_carlo.predictions)

H

harmonic_mean() (in module clustering_metrics.metrics) harmonic_mean_weighted() (in module clustering_metrics.metrics) hash_builtin_128() (in module clustering_metrics.ext) hash_builtin_64() (in module clustering_metrics.ext) hash_combine_boost() (in module clustering_metrics.ext) hash_combine_boost_64() (in module clustering_metrics.ext) hash_combine_murmur() (in module clustering_metrics.ext)

hash_combine_murmur_64() (in module clustering_metrics.ext) hash_md5_128() (in module clustering_metrics.ext) hash_md5_64() (in module clustering_metrics.ext) hashable() (in module clustering_metrics.ext) homogeneity_completeness_v_measure() (in module clustering_metrics.metrics) hypergeometric() (clustering_metrics.metrics.ConfusionMatrix2 method)

I

informedness() (clustering_metrics.metrics.ConfusionMatrix2 method) isclose() (in module clustering_metrics.fixes) iter_clusters() (clustering_metrics.monte_carlo.predictions.Grid method)

iter_grid() (clustering_metrics.monte_carlo.predictions.Grid method) iter_matrices() (clustering_metrics.monte_carlo.predictions.Grid method)

J

jaccard_coeff() (clustering_metrics.metrics.ConfusionMatrix2 method) jaccard_similarity() (in module clustering_metrics.metrics)

join_clusters() (in module clustering_metrics.monte_carlo.predictions)

K

kappa() (clustering_metrics.metrics.ConfusionMatrix2 method)

kappas() (clustering_metrics.metrics.ConfusionMatrix2 method)

L

lapply() (in module clustering_metrics.utils) lform() (clustering_metrics.metrics.ConfusionMatrix2 method) lgamma() (in module clustering_metrics.entropy) LiftCurve (class in clustering_metrics.ranking)

linear_sum_assignment() (in module clustering_metrics.hungarian) loevinger_coeff() (clustering_metrics.metrics.ConfusionMatrix2 method) long2int() (in module clustering_metrics.ext)

M

markedness() (clustering_metrics.metrics.ConfusionMatrix2 method) matrix_from_labels() (clustering_metrics.monte_carlo.predictions.Grid static method) matrix_from_matrices() (clustering_metrics.monte_carlo.predictions.Grid static method) matthews_corr() (clustering_metrics.metrics.ConfusionMatrix2 method) max_informedness() (clustering_metrics.ranking.RocCurve method) mic_scores() (clustering_metrics.metrics.ConfusionMatrix2 method)

mirkin_match_coeff() (clustering_metrics.metrics.ClusteringMetrics method) mirkin_mismatch_coeff() (clustering_metrics.metrics.ClusteringMetrics method) mp_corr() (clustering_metrics.metrics.ConfusionMatrix2 method) muc_scores() (clustering_metrics.metrics.ContingencyTable method) mutual_info_score() (clustering_metrics.metrics.ContingencyTable method) (in module clustering_metrics.metrics)

N

ndarray_from_iter() (in module clustering_metrics.entropy) NLL() (clustering_metrics.metrics.ConfusionMatrix2 method)

NPV() (clustering_metrics.metrics.ConfusionMatrix2 method) num2bool() (in module clustering_metrics.ranking)

O

ochiai_coeff() (clustering_metrics.metrics.ConfusionMatrix2 method) ochiai_coeff_adj() (clustering_metrics.metrics.ConfusionMatrix2 method)

optimal_cutoff() (clustering_metrics.ranking.RocCurve method) overlap_coeff() (clustering_metrics.metrics.ConfusionMatrix2 method)

P

pairwise (clustering_metrics.metrics.ClusteringMetrics attribute) pairwise_hcv() (clustering_metrics.metrics.ConfusionMatrix2 method) parse_args() (in module clustering_metrics.monte_carlo.predictions) PHashCombiner (class in clustering_metrics.ext) PLL() (clustering_metrics.metrics.ConfusionMatrix2 method)

plot() (clustering_metrics.monte_carlo.predictions.Grid static method) (clustering_metrics.ranking.LiftCurve method) (clustering_metrics.ranking.RocCurve method) PPV() (clustering_metrics.metrics.ConfusionMatrix2 method) precision() (clustering_metrics.metrics.ConfusionMatrix2 method) prevalence_index() (clustering_metrics.metrics.ConfusionMatrix2 method) product_moment() (in module clustering_metrics.metrics)

R

rand_index() (clustering_metrics.metrics.ClusteringMetrics method) random_string() (in module clustering_metrics.utils) randset() (in module clustering_metrics.utils) ratio2weights() (in module clustering_metrics.metrics) recall() (clustering_metrics.metrics.ConfusionMatrix2 method) relabel_negatives() (in module clustering_metrics.monte_carlo.predictions)

roc_auc_score() (in module clustering_metrics.ranking) roc_curve() (in module clustering_metrics.skutils) RocCurve (class in clustering_metrics.ranking) row_diag() (clustering_metrics.metrics.ContingencyTable method) run() (in module clustering_metrics.monte_carlo.predictions)

S

sample_with_error() (in module clustering_metrics.monte_carlo.predictions) sensitivity() (clustering_metrics.metrics.ConfusionMatrix2 method) serialize_args() (in module clustering_metrics.monte_carlo.utils) show_cluster() (clustering_metrics.monte_carlo.predictions.Grid method) show_matrix() (clustering_metrics.monte_carlo.predictions.Grid method) sigsim() (in module clustering_metrics.utils) simulate_clustering() (in module clustering_metrics.monte_carlo.predictions) simulate_labeling() (in module clustering_metrics.monte_carlo.predictions) sokal_sneath_coeff() (clustering_metrics.metrics.ConfusionMatrix2 method) sort_by_length() (in module clustering_metrics.utils)

specificity() (clustering_metrics.metrics.ConfusionMatrix2 method) split_clusters() (in module clustering_metrics.monte_carlo.predictions) split_join_distance() (clustering_metrics.metrics.ContingencyTable method) split_join_similarity() (clustering_metrics.metrics.ContingencyTable method) split_join_similarity_m1() (clustering_metrics.metrics.ContingencyTable method) split_join_similarity_m2c() (clustering_metrics.metrics.ContingencyTable method) split_join_similarity_m2r() (clustering_metrics.metrics.ContingencyTable method) split_join_similarity_m3() (clustering_metrics.metrics.ContingencyTable method) stable_cumsum() (in module clustering_metrics.skutils)

T

talburt_wang_index() (clustering_metrics.metrics.ContingencyTable method) TN (clustering_metrics.metrics.ConfusionMatrix2 attribute) TNR() (clustering_metrics.metrics.ConfusionMatrix2 method) to_array() (clustering_metrics.metrics.ContingencyTable method)

to_ccw() (clustering_metrics.metrics.ConfusionMatrix2 method) TP (clustering_metrics.metrics.ConfusionMatrix2 attribute) TPR() (clustering_metrics.metrics.ConfusionMatrix2 method) tsorted() (in module clustering_metrics.utils)

U

UndefinedMetricWarning

unitsq_sigmoid() (in module clustering_metrics.metrics)

V

VarlenHash (class in clustering_metrics.ext) vi_distance() (clustering_metrics.metrics.ContingencyTable method) vi_similarity() (clustering_metrics.metrics.ContingencyTable method) vi_similarity_m1() (clustering_metrics.metrics.ContingencyTable method)

vi_similarity_m2c() (clustering_metrics.metrics.ContingencyTable method) vi_similarity_m2r() (clustering_metrics.metrics.ContingencyTable method) vi_similarity_m3() (clustering_metrics.metrics.ContingencyTable method)

W

with_clusters() (clustering_metrics.monte_carlo.predictions.Grid class method) with_matrices() (clustering_metrics.monte_carlo.predictions.Grid class method)

with_sim_clusters() (clustering_metrics.monte_carlo.predictions.Grid class method) wrap_scalar() (in module clustering_metrics.utils)

X

xcoeff() (clustering_metrics.metrics.ConfusionMatrix2 method)

Y

yule_q() (clustering_metrics.metrics.ConfusionMatrix2 method)

yule_y() (clustering_metrics.metrics.ConfusionMatrix2 method)