clustering_metrics.fixes module¶

Augments/fixes NumPy. All code in this module is from Scikit-Learn

clustering_metrics.fixes.bincount(x, weights=None, minlength=None)¶

Count number of occurrences of each value in array of non-negative ints.

The number of bins (of size 1) is one larger than the largest value in x. If minlength is specified, there will be at least this number of bins in the output array (though it will be longer if necessary, depending on the contents of x). Each bin gives the number of occurrences of its index value in x. If weights is specified the input array is weighted by it, i.e. if a value n is found at position i, out[n] += weight[i] instead of out[n] += 1.

Parameters:

x : array_like, 1 dimension, nonnegative ints

Input array.

weights : array_like, optional

Weights, array of the same shape as x.

minlength : int, optional

A minimum number of bins for the output array.

New in version 1.6.0.

Returns:

out : ndarray of ints

The result of binning the input array. The length of out is equal to np.amax(x)+1.

Raises:

ValueError

If the input is not 1-dimensional, or contains elements with negative values, or if minlength is non-positive.

TypeError

If the type of the input is float or complex.

See also

histogram, digitize, unique

Examples

>>> np.bincount(np.arange(5))
array([1, 1, 1, 1, 1])
>>> np.bincount(np.array([0, 1, 1, 3, 2, 1, 7]))
array([1, 3, 1, 1, 0, 0, 0, 1])

>>> x = np.array([0, 1, 1, 3, 2, 1, 7, 23])
>>> np.bincount(x).size == np.amax(x)+1
True

The input array needs to be of integer dtype, otherwise a TypeError is raised:

>>> np.bincount(np.arange(5, dtype=np.float))
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
TypeError: array cannot be safely cast to required type

A possible use of bincount is to perform sums over variable-size chunks of an array, using the weights keyword.

>>> w = np.array([0.3, 0.5, 0.2, 0.7, 1., -0.6]) # weights
>>> x = np.array([0, 1, 1, 2, 2, 2])
>>> np.bincount(x,  weights=w)
array([ 0.3,  0.7,  1.1])

clustering_metrics.fixes.isclose(a, b, rtol=1e-05, atol=1e-08, equal_nan=False)[source]¶

Returns a boolean array where two arrays are element-wise equal within a tolerance.

The tolerance values are positive, typically very small numbers. The relative difference (rtol * abs(b)) and the absolute difference atol are added together to compare against the absolute difference between a and b.

Parameters:

a, b : array_like

Input arrays to compare.

rtol : float

The relative tolerance parameter (see Notes).

atol : float

The absolute tolerance parameter (see Notes).

equal_nan : bool

Whether to compare NaN’s as equal. If True, NaN’s in a will be considered equal to NaN’s in b in the output array.

Returns:

y : array_like

Returns a boolean array of where a and b are equal within the given tolerance. If both a and b are scalars, returns a single boolean value.